OM-RGC_v2 KO assignment by GhostKoara, BlastKoala

TARA.nr.95.std.faa.ko               ... results of KO annotation by GhostKOALA, BlastKoala
c_family_euk+genus_prok+viruses.pep ... database used for KO annotation by GhostKOALA, BlastKOALA
ko.def                              ... definition of KO in TARA.nr.95.std.faa.ko
ko2module_pathway.tsv               ... dblinks from KO in TARA.nr.95.std.faa.ko to KEGG MODULE, PATHWAY
module.def                          ... definition of MODULE in ko2module_pathway.tsv
pathway.def                         ... definition of PATHWAY in ko2module_pathway.tsv


46,775,154  # (1) Total number of sequences
11,033,119  # (2) Number of sequences with KO(s) assigned by BlastKOALA
15,941,435  # (3) Number of sequences with KO(s) assigned by GhostKOALA
10,873,846  # (4) Number of sequences with KO(s) assigned by BlastKOALA and GhostKOALA (this includes sequences to which Ghost and Blast assigned different KOs.)
10,863,721  # (5) Number of sequences to which the same KO was assigned by BlastKOALA and GhostKOALA
    10,125  # (6) Number of sequences to which BlastKOALA and GhostKOALA assigned different KOs
   159,273  # (7) Number of sequences to which only BlastKOALA assigned KOs
 5,067,589  # (8) Number of sequences to which only GhostKOALA assigned KOs


Reference:
Kanehisa, M., Sato, Y., and Morishima, K. (2016) BlastKOALA and GhostKOALA: KEGG tools for functional characterization of genome and metagenome sequences. J. Mol. Biol. 428, 726-731.

last update: 2018/05/23