Terpenoid biosynthesis - Reference pathway

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Reference pathway Reference pathway (Reaction) Reference pathway (KO) All organisms in KEGG Homo sapiens (human) Mus musculus (mouse) Rattus norvegicus (rat) Bos taurus (cow) Xenopus laevis (African clawed frog) Danio rerio (zebrafish) Drosophila melanogaster (fruit fly) Caenorhabditis elegans (nematode) Arabidopsis thaliana (thale cress) Cyanidioschyzon merolae Saccharomyces cerevisiae Ashbya gossypii (Eremothecium gossypii) Candida albicans Schizosaccharomyces pombe Cryptococcus neoformans JEC21 Encephalitozoon cuniculi Dictyostelium discoideum Plasmodium falciparum Cryptosporidium parvum Cryptosporidium hominis Theileria parva Trypanosoma brucei Trypanosoma cruzi Leishmania major Escherichia coli K-12 MG1655 Escherichia coli K-12 W3110 Escherichia coli O157 EDL933 Escherichia coli O157 Sakai Escherichia coli CFT073 Salmonella typhi CT18 Salmonella enterica serovar typhi Ty2 Salmonella enterica serovar Paratyphi A Salmonella enterica serovar Choleraesuis Salmonella typhimurium LT2 Yersinia pestis CO92 Yersinia pestis KIM Yersinia pestis Mediaevails Yersinia pseudotuberculosis Shigella flexneri 301 Shigella flexneri 2457T Shigella sonnei Erwinia carotovora Photorhabdus luminescens Buchnera aphidicola APS Buchnera aphidicola Sg Buchnera aphidicola Bp Wigglesworthia brevipalpis Blochmannia floridanus Blochmannia pennsylvanicus Haemophilus influenzae (serotype d) Haemophilus influenzae 86-028NP (nontypeable) Haemophilus ducreyi Pasteurella multocida Mannheimia succiniciproducens Xylella fastidiosa 9a5c Xylella fastidiosa Temecula1 Xanthomonas campestris ATCC 33913 Xanthomonas campestris 8004 Xanthomonas campestris pv. vesicatoria Xanthomonas axonopodis Xanthomonas oryzae Vibrio cholerae Vibrio vulnificus CMCP6 Vibrio vulnificus YJ016 Vibrio parahaemolyticus Vibrio fischeri Photobacterium profundum Pseudomonas aeruginosa Pseudomonas putida Pseudomonas syringae DC3000 Pseudomonas syringae B728a Pseudomonas syringae phaseolicola 1448A Pseudomonas fluorescens Pf-5 Pseudomonas fluorescens PfO-1 Psychrobacter arcticum Acinetobacter sp. ADP1 Shewanella oneidensis Idiomarina loihiensis Colwellia psychrerythraea Pseudoalteromonas haloplanktis Coxiella burnetii Legionella pneumophila Philadelphia 1 Legionella pneumophila Lens Legionella pneumophila Paris Methylococcus capsulatus Francisella tularensis Thiomicrospira crunogena Nitrosococcus oceani Hahella chejuensis Neisseria meningitidis MC58 (serogroup B) Neisseria meningitidis Z2491 (serogroup A) Neisseria gonorrhoeae Chromobacterium violaceum Ralstonia solanacearum Ralstonia eutropha Burkholderia mallei Burkholderia pseudomallei K96243 Burkholderia pseudomallei 1710b Burkholderia thailandensis Burkholderia sp. 383 Bordetella pertussis Bordetella parapertussis Bordetella bronchiseptica Nitrosomonas europaea Nitrosospira multiformis Azoarcus sp. EbN1 Dechloromonas aromatica Thiobacillus denitrificans Helicobacter pylori 26695 Helicobacter pylori J99 Helicobacter hepaticus Wolinella succinogenes Thiomicrospira denitrificans Campylobacter jejuni NCTC11168 Campylobacter jejuni RM1221 Geobacter sulfurreducens Geobacter metallireducens Pelobacter carbinolicus Desulfovibrio vulgaris Hildenborough Desulfovibrio desulfuricans Bdellovibrio bacteriovorus Desulfotalea psychrophila Rickettsia prowazekii Rickettsia typhi Rickettsia conorii Rickettsia felis Wolbachia wMel Wolbachia wBm Pelagibacter ubique Anaplasma marginale Ehrlichia ruminantium Welgevonden (South Africa) Ehrlichia ruminantium Welgevonden (France) Ehrlichia ruminantium Gardel Ehrlichia canis Mesorhizobium loti Sinorhizobium meliloti Agrobacterium tumefaciens C58 (UWash/Dupont) Agrobacterium tumefaciens C58 (Cereon) Rhizobium etli Brucella melitensis Brucella melitensis biovar Abortus Brucella suis Brucella abortus Bradyrhizobium japonicum Rhodopseudomonas palustris CGA009 Nitrobacter winogradskyi Bartonella henselae Bartonella quintana Caulobacter crescentus Silicibacter pomeroyi Rhodobacter sphaeroides Zymomonas mobilis Gluconobacter oxydans Rhodospirillum rubrum Bacillus subtilis Bacillus halodurans Bacillus anthracis Ames Bacillus anthracis Ames 0581 Bacillus anthracis A2012 Bacillus anthracis Sterne Bacillus cereus ATCC 14579 Bacillus cereus ATCC 10987 Bacillus cereus ZK Bacillus thuringiensis Bacillus licheniformis ATCC 14580 Bacillus licheniformis DSM13 Bacillus clausii Oceanobacillus iheyensis Geobacillus kaustophilus Staphylococcus aureus N315 Staphylococcus aureus Mu50 Staphylococcus aureus MW2 Staphylococcus aureus MRSA252 Staphylococcus aureus MSSA476 Staphylococcus aureus COL Staphylococcus aureus RF122 Staphylococcus epidermidis ATCC 12228 Staphylococcus epidermidis RP62A Staphylococcus haemolyticus Staphylococcus saprophyticus Listeria monocytogenes EGD-e Listeria monocytogenes F2365 Listeria innocua Lactococcus lactis Streptococcus pyogenes SF370 (serotype M1) Streptococcus pyogenes MGAS5005 (serotype M1) Streptococcus pyogenes MGAS8232 (serotype M18) Streptococcus pyogenes MGAS315 (serotype M3) Streptococcus pyogenes SSI-1 (serotype M3) Streptococcus pyogenes MGAS10394 (serotype M6) Streptococcus pyogenes MGAS6180 (serotype M28) Streptococcus pneumoniae TIGR4 Streptococcus pneumoniae R6 Streptococcus agalactiae 2603 Streptococcus agalactiae NEM316 Streptococcus agalactiae A909 Streptococcus mutans Streptococcus thermophilus CNRZ1066 Streptococcus thermophilus LMG18311 Lactobacillus plantarum Lactobacillus johnsonii Lactobacillus acidophilus Lactobacillus sakei Enterococcus faecalis Clostridium acetobutylicum Clostridium perfringens Clostridium tetani E88 Carboxydothermus hydrogenoformans Thermoanaerobacter tengcongensis Moorella thermoacetica Mycoplasma penetrans Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis CDC1551 Mycobacterium bovis Mycobacterium leprae Mycobacterium avium paratuberculosis Corynebacterium glutamicum (Kitasato) Corynebacterium glutamicum (Bielefeld) Corynebacterium efficiens Corynebacterium jeikeium Nocardia farcinica Corynebacterium diphtheriae Streptomyces coelicolor Streptomyces avermitilis Tropheryma whipplei Twist Tropheryma whipplei TW08/27 Leifsonia xyli xyli CTCB07 Propionibacterium acnes Thermobifida fusca Bifidobacterium longum Symbiobacterium thermophilum Fusobacterium nucleatum Rhodopirellula baltica Chlamydia trachomatis serovar D Chlamydia trachomatis serovar A Chlamydia muridarum Chlamydophila pneumoniae CWL029 Chlamydophila pneumoniae AR39 Chlamydophila pneumoniae J138 Chlamydophila pneumoniae TW183 Chlamydophila caviae Chlamydophila abortus Parachlamydia sp. UWE25 Borrelia burgdorferi Borrelia garinii Treponema pallidum Treponema denticola Leptospira interrogans serovar lai Leptospira interrogans serovar Copenhageni Synechocystis sp. PCC6803 Synechococcus sp. WH8102 Synechococcus sp. PCC6301 Synechococcus sp. PCC7942 Synechococcus sp. CC9605 Synechococcus sp. CC9902 Thermosynechococcus elongatus Gloeobacter violaceus Anabaena sp. PCC7120 Anabaena variabilis Prochlorococcus marinus SS120 Prochlorococcus marinus MED4 Prochlorococcus marinus MIT9313 Prochlorococcus marinus NATL2A Prochlorococcus marinus MIT9312 Bacteroides thetaiotaomicron Bacteroides fragilis YCH46 Bacteroides fragilis NCTC9343 Porphyromonas gingivalis Salinibacter ruber Chlorobium tepidum Chlorobium chlorochromatii Pelodictyon luteolum Dehalococcoides ethenogenes Dehalococcoides CBDB1 Deinococcus radiodurans Thermus thermophilus HB27 Thermus thermophilus HB8 Aquifex aeolicus Thermotoga maritima Methanococcus jannaschii Methanococcus maripaludis Methanosarcina acetivorans Methanosarcina barkeri Methanosarcina mazei Methanobacterium thermoautotrophicum Methanosphaera stadtmanae Methanopyrus kandleri Archaeoglobus fulgidus Halobacterium sp. NRC-1 Haloarcula marismortui Natronomonas pharaonis Thermoplasma acidophilum Thermoplasma volcanium Picrophilus torridus Pyrococcus horikoshii Pyrococcus abyssi Pyrococcus furiosus Thermococcus kodakaraensis Aeropyrum pernix Sulfolobus solfataricus Sulfolobus tokodaii Sulfolobus acidocaldarius Pyrobaculum aerophilum     Current selection